Challenge-related publications:

Teaching Materials for CMI-PB: Hsiao J, Shinde P, Willemsen L, Kojima M, Reyna J, Peters B, Grant BJ. Exploring Pertussis Vaccination Through Systems Vaccinology.Second CMI-PB Challenge: Shinde P, Willemsen L, Anderson M, Aoki M, Basu S, Burel JG, Cheng P, Ghosh Dastidar S, Dunleavy A, Einav T, Forschmiedt J, ..., Ay F, Kleinstein S and Peters B. Putting computational models of immunity to the test—An invited challenge to predict B. pertussis vaccination responses. PLoS computational biology. 2025 Mar 31;21(3):e1012927.First CMI-PB Challenge: Shinde P, Soldevila F, Reyna J, Aoki M, Rasmussen M, Willemsen L, Kojima M, Ha B, Greenbaum JA, Overton JA, Guzman-Orozco H, ..., Ay F, Kleinstein S and Peters B. A multi-omics systems vaccinology resource to develop and test computational models of immunity. Cell Reports Methods. 2024 Mar 25;4(3).

Other publications:

da Silva Antunes R, Soldevila F, Pomaznoy M, Babor M, Bennett J, Tian Y, Khalil N, Qian Y, Mandava A, Scheuermann RH, Cortese M. A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy. JCI insight. 2021 Apr 8;6(7):e141023.Willemsen L, Lee J, Shinde P, Soldevila F, Aoki M, Orfield S, Kojima M, da Silva Antunes R, Sette A, Peters B. Th1 polarization in Bordetella pertussis vaccine responses is maintained through a positive feedback loop. Nature Communications. 2025 Apr 1;16(1):3132.